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Volume 14; Issue 2 Suppleme
Main
BMC Bioinformatics
Volume 14; Issue 2 Suppleme
BMC Bioinformatics
Volume 14; Issue 2 Suppleme
1
Correction: CoNVEX: copy number variation estimation in exome sequencing data using HMM
Kaushalya C Amarasinghe, Jason Li, Saman K Halgamuge
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 74 KB
Vos balises:
english, 2013
2
Mass spectrometry-based protein identification by integrating de novo sequencing with database searching
Penghao Wang, Susan R Wilson
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.18 MB
Vos balises:
english, 2013
3
CoNVEX: copy number variation estimation in exome sequencing data using HMM
Kaushalya C Amarasinghe, Jason Li, Saman K Halgamuge
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 787 KB
Vos balises:
english, 2013
4
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs
Tzu-Hao Chang, Hsi-Yuan Huang, Justin Bo-Kai Hsu, Shun-Long Weng…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.03 MB
Vos balises:
english, 2013
5
Molecular docking analysis of 2009-H1N1 and 2004-H5N1 influenza virus HLA-B*4405-restricted HA epitope candidates: implications for TCR cross-recognition and vaccine development
Chinh TT Su, Christian Schönbach, Chee-Keong Kwoh
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 215 KB
Vos balises:
english, 2013
6
Building Markov state models with solvent dynamics
Chen Gu, Huang-Wei Chang, Lutz Maibaum, Vijay S Pande…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.22 MB
Vos balises:
english, 2013
7
Reconstruction of phyletic trees by global alignment of multiple metabolic networks
Cheng-Yu Ma, Shu-Hsi Lin, Chi-Ching Lee, Chuan Yi Tang, Bonnie Berger…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 725 KB
Vos balises:
english, 2013
8
A practicalO(nlog2n) time algorithm for computing the triplet distance on binary trees
Andreas Sand, Gerth Stølting Brodal, Rolf Fagerberg…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 418 KB
Vos balises:
english, 2013
9
Characterising RNA secondary structure space using information entropy
Zsuzsanna Sükösd, Bjarne Knudsen, James WJ Anderson, Ádám Novák…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 452 KB
Vos balises:
english, 2013
10
Inferring homologous protein-protein interactions through pair position specific scoring matrix
Chun-Yu Lin, Yung-Chiang Chen, Yu-Shu Lo, Jinn-Moon Yang
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.19 MB
Vos balises:
english, 2013
11
Prediction of peptides binding to MHC class I and II alleles by temporal motif mining
Cem Meydan, Hasan H Otu, Osman Uğur Sezerman
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 621 KB
Vos balises:
english, 2013
12
Identifying cross-category relations in gene ontology and constructing genome-specific term association networks
Jiajie Peng, Jin Chen, Yadong Wang
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 816 KB
Vos balises:
english, 2013
13
Sequence-only evolutionary and predicted structural features for the prediction of stability changes in protein mutants
Lukas Folkman, Bela Stantic, Abdul Sattar
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 224 KB
Vos balises:
english, 2013
14
Adaptive bi-level programming for optimal gene knockouts for targeted overproduction under phenotypic constraints
Shaogang Ren, Bo Zeng, Xiaoning Qian
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 463 KB
Vos balises:
english, 2013
15
The road not taken: retreat and diverge in local search for simplified protein structure prediction
Swakkhar Shatabda, MA Hakim Newton, Mahmood A Rashid, Duc Nghia Pham…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 285 KB
Vos balises:
english, 2013
16
A novel subgradient-based optimization algorithm for blockmodel functional module identification
Yijie Wang, Xiaoning Qian
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.42 MB
Vos balises:
english, 2013
17
Efficient known ncRNA search including pseudoknots
Cheng Yuan, Yanni Sun
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 642 KB
Vos balises:
english, 2013
18
Prediction of B-cell epitopes using evolutionary information and propensity scales
Scott Yi-Heng Lin, Cheng-Wei Cheng, Emily Chia-Yu Su
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 298 KB
Vos balises:
english, 2013
19
Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM
Rujira Achawanantakun, Yanni Sun
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 675 KB
Vos balises:
english, 2013
20
Widespread evidence of viral miRNAs targeting host pathways
Joseph W Carl Jr, Joanne Trgovcich, Sridhar Hannenhalli
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 222 KB
Vos balises:
english, 2013
21
A model of the circadian clock in the cyanobacterium Cyanothece sp. ATCC 51142
Nguyen Xuan Vinh, Madhu Chetty, Ross Coppel, Sandeep Gaudana…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 454 KB
Vos balises:
english, 2013
22
iStable: off-the-shelf predictor integration for predicting protein stability changes
Chi-Wei Chen, Jerome Lin, Yen-Wei Chu
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 703 KB
Vos balises:
english, 2013
23
Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice
Mahmood A Rashid, MA Hakim Newton, Md Tamjidul Hoque…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 779 KB
Vos balises:
english, 2013
24
Protein disulfide topology determination through the fusion of mass spectrometric analysis and sequence-based prediction using Dempster-Shafer theory
Rahul Singh, William Murad
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 400 KB
Vos balises:
english, 2013
25
Discovery and analysis of consistent active sub-networks in cancers
Raj K Gaire, Lorey Smith, Patrick Humbert, James Bailey…
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 1.05 MB
Vos balises:
english, 2013
26
A multispecies polyadenylation site model
Eric S Ho, Samuel I Gunderson, Siobain Duffy
Journal:
BMC Bioinformatics
Année:
2013
Langue:
english
Fichier:
PDF, 462 KB
Vos balises:
english, 2013
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